;   MEGA-CC (Molecular Evolutionary Genetics Analysis Compute Core)
;
;   Suggested Citation for MEGA-CC 10:
;
;   Kumar S, Stecher G, Li M, Knyaz C, Tamura K (2018)
;   MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms
;   Molecular Biology and Evolution (https://doi.org/10.1093/molbev/msy096)
;
;   Kumar S, Stecher G, Peterson D, and Tamura K (2012)
;   MEGA-CC: Computing Core of Molecular Evolutionary Genetics
;   Analysis Program for Automated and Iterative Data Analysis.
;   Bioinformatics (2012) 28:2685-2686 (Epub 2012 Aug 24)

[General Info]

	Data Type                               = nucleotide (non-coding)
	No. of Taxa                             =       33
	No. of Sites                            =      546
	Data File                               = '/var/www/CpnClassiPhyRWebUI/CpnClassiPhyR/subgroup_metadata/phylogenetics/subgroups_clustalw_align.meg'
	Settings File                           = '/var/www/CpnClassiPhyRWebUI/CpnClassiPhyR/config/NJ_nucleotide.mao'
	Command Line                            = /usr/lib/megax/megacc -d /var/www/CpnClassiPhyRWebUI/CpnClassiPhyR/subgroup_metadata/phylogenetics/subgroups_clustalw_align.meg -a /var/www/CpnClassiPhyRWebUI/CpnClassiPhyR/config/NJ_nucleotide.mao -o /var/www/CpnClassiPhyRWebUI/CpnClassiPhyR/subgroup_metadata/phylogenetics/subgroups_mega_tree

[Analysis Settings]

	Analysis                                = Phylogeny Reconstruction
	Scope                                   = All Selected Taxa
	Statistical Method                      = Neighbor-joining
	Phylogeny Test                          = Not Applicable
	Test of Phylogeny                       = Bootstrap method
	No. of Bootstrap Replications           = 1000
	Substitutions Type                      = Nucleotide
	Model/Method                            = Tamura-Nei model
	Substitutions to Include                = d: Transitions + Transversions
	Rates among Sites                       = Uniform Rates
	Gamma Parameter                         = Not Applicable
	Pattern among Lineages                  = Same (Homogeneous)
	Gaps/Missing Data Treatment             = Complete deletion
	Site Coverage Cutoff (%)                = Not Applicable
	Has Time Limit                          = False
	Maximum Execution Time                  = -1
	datatype                                = snNucleotide
	containsCodingNuc                       = False
	MissingBaseSymbol                       = ?
	IdenticalBaseSymbol                     = .
	GapSymbol                               = -

[Analysis Statistics]

	Start Time                              = 02/06/2020 08:51:01 PM
	End Time                                = 02/06/2020 08:51:11 PM
	Execution Time                          =   10.573 (seconds)
	Peak Memory Used(Working Set)           = Not available
	Sum of branch lengths                   =    2.561